Publications and data
Here’s a list of my publications with their associated data. Don’t hesitate to email me to access a paper or to ask any questions!
Most papers are published with online supplementary material. Code, analysis files, and processed genetic sequence data (e.g. demultiplexed reads, SNP files, or alignments) have been archived for most publications in repositories. Where raw data (e.g. original DNA sequences or morphometric photos) are unavailable, please contact me or my former supervisors for access. My GitHub page has code for most studies I have led.
You can also view my publications on my ORCID, Web of Science, and GoogleScholar profiles. Web of Science also lists my verified peer reviews.
Submitted
Pearson RA, Preston G, Bulleid J, David S, Zareie-Vaux F, Clements D, Tait LW. Accelerated development and deployment of computer vision models for invasive aquatic pests. Submitted to Scientific Reports.
2026
Carmelet-Rescan D, Trewick SA, Bridger C, Pohe SR, Morgan-Richards M, Zareie-Vaux F. Are species distribution models using climate variables suitable to forecast the changing distribution of freshwater organisms? Freshwater Biology (accepted).
Samsing F, Arbon P, Arnold M, Barnes AC, Bass D, Becker JA, Bennette J, Caraguel C, Carson J, Costa VA, Dumond T, Geoghegan J, Hutson KS, Knowles G, Knowles J, Lockton K, Pope M, Rudenko O, Sullivan R, Zareie-Vaux F, Williams J, Wiley K. (2026). High-throughput sequencing in aquaculture disease investigations: challenges and opportunities for implementation. Reviews in Aquaculture 18, e70193. 10.1111/raq.70193
Lane HS, Bilewitch JP, Brooks AS, Smith L, Pomarède M, Dymond M, Michael KP, Zareie-Vaux F. (2026). Concurrent infections by Bonamia species (Haplosporidia) do not cause more intense infections. Parasitology 153, 103–110. 10.1017/S0031182025100978
2024
Vaux F, Parvizi E, Duffy GA, Dutoit L, Craw D, Waters JM, Fraser CI. (2024). First genomic snapshots of recolonising lineages following a devastating earthquake. Ecography 2024, e07117. 10.1111/ecog.07117
Pearman WS, Morales SE, Vaux F, Gemmell NJ, Fraser CI. (2024). Host population crashes disrupt the diversity of associated marine microbiomes. Environmental Microbiology 26, e16611. 10.1111/1462-2920.16611
2023
Vaux F, Fraser CI, Craw D, Read S, Waters JM. (2023). Integrating kelp genomic analyses and geological data to reveal ancient earthquake impacts. Journal of the Royal Society Interface 20, 20230105. 10.1098/rsif.2023.0105
Vaux F, Dutoit L, Fraser CI, Waters JM. (2023). Genotyping-by-sequencing for biogeography. Journal of Biogeography 50, 262–281. 10.1111/jbi.14516
2022
Vaux F, Parvizi E, Craw D, Fraser CI, Waters JM. (2022). Parallel recolonisations generate distinct genomic sectors in kelp following high magnitude earthquake disturbance. Molecular Ecology 31, 4818–4831. 10.1111/mec.16535
Thomas LJ, Milotic M, Vaux F, Poulin R. (2022). Lurking in the water: testing eDNA metabarcoding as a tool for ecosystem-wide parasite detection. Parasitology 149, 261–269. 10.1017/S0031182021001840
2021
Song W, Xie Y, Sun M, Li X, Fitzpatrick CK, Vaux F, O’Malley KG, Zhang Q, Qi J, He Y. (2021). A duplicated amh is the master sex-determining gene for Sebastes rockfish in the Northwest Pacific. Open Biology 11, 210063. 10.1098/rsob.210063
Vaux F, Craw D, Fraser CI, Waters JM. (2021). Northward range extension for Durvillaea poha bull kelp: response to tectonic disturbance? Journal of Phycology 57, 1411–1418. 10.1111/jpy.13179
Vaux F, Bohn S, Hyde JR, O’Malley KGO. (2021). Adaptive markers distinguish North and South Pacific Albacore amid low population differentiation. Evolutionary Applications 14, 1343–1364. 10.1111/eva.13202
2020
Vaux F, Gemmell MR, Hills SFK, Marshall BA, Beu AG, Crampton JSC, Trewick SA, Morgan-Richards M. (2020). Lineage identification affects estimates of evolutionary mode in marine snails. Systematic Biology 69, 1106–1121. 10.1093/sysbio/syaa018
Vaux F, Aycock HM, Bohn S, Rasmuson LK, O’Malley KG. (2020). Sex identification PCR-RFLP assay tested in eight species of Sebastes rockfish. Conservation Genetics Resources 12, 541–544. 10.1007/s12686-020-01150-y
2019
Vaux F, Rasmuson LK, Kautzi LA, Rankin PS, Blume MTO, Lawrence KA, Bohn S, O’Malley KG. (2019). Sex matters: otolith shape and genomic variation in deacon rockfish (Sebastes diaconus). Ecology and Evolution 9, 13153–13173. 10.1002/ece3.5763
O’Malley KG, Vaux F, Black AN. (2019). Characterizing neutral and adaptive genomic differentiation in a changing climate: the most northerly freshwater fish as a model. Ecology and Evolution 9, 2004–2017. 10.1002/ece3.4891
Vaux F, Daly EE, Morgan-Richards M, Trewick SA. (2019). Tuatara and a new morphometric dataset for Rhynchocephalia: a response to Herrera-Flores et al. Palaeontology 62, 321–334. 10.1111/pala.12402
2018
Gemmell MR, Trewick SA, Crampton JS, Vaux F, Hills SFK, Daly EE, Marshall BA, Beu AG, Morgan-Richards M. (2018). Genetic structure and shell shape variation within a rocky shore whelk suggest both diverging and constraining selection with gene flow. Biological Journal of the Linnean Society 125, 827–843. 10.1093/biolinnean/bly142
Vaux F, Crampton JSC, Trewick SA, Marshall BA, Beu AG, Hills SFK, Morgan-Richards M. (2018). Evolutionary lineages of marine snails identified using molecular phylogenetics and geometric morphometric analysis of shells. Molecular Phylogenetics and Evolution 127, 626–637. 10.1016/j.ympev.2018.06.009
Marshall BA, Hills SFK, Vaux F. (2018). A new species of Penion P. Fischer, 1884 from northern New Zealand (Mollusca: Neogastropoda: Buccinoidea). Molluscan Research 38, 238–242. 10.1080/13235818.2017.1420398
Vaux F, Hills SFK, Marshall BA, Trewick SA, Morgan-Richards M. (2018). Genome statistics and phylogenetic reconstructions for Southern Hemisphere whelks (Gastropoda: Buccinulidae). Data in Brief 16, 172–181. 10.1016/j.dib.2017.11.021
2017
Vaux F, Hills SFK, Marshall BA, Trewick SA, Morgan-Richards M. (2017). A phylogeny of Southern Hemisphere whelks (Gastropoda: Buccinulidae) and concordance with the fossil record. Molecular Phylogenetics and Evolution 114, 367–381. 10.1016/j.ympev.2017.06.018
Vaux F, Marshall BA, Crampton JS, Trewick SA, Morgan-Richards M. (2017). Geometric morphometric analysis reveals that the shells of male and female siphon whelks Penion chathamensis are the same size and shape. Molluscan Research 37, 194–201. 10.1080/13235818.2017.1279474
Vaux F, Trewick SA, Morgan-Richards M. (2017). Speciation through the looking-glass. Biological Journal of the Linnean Society 120, 480–488. 10.1111/bij.12872
2016
Vaux F, Trewick SA, Morgan-Richards M. (2016). Lineages, splits and divergence challenge whether the terms anagenesis and cladogenesis are necessary. Biological Journal of the Linnean Society 117, 165–176. 10.1111/bij.12665
Issue covers
A few of my papers have featured as issue covers…
Ecography
June 2024
Journal of Phycology
October 2021
Molluscan Research
August 2017
